Although it does not mention what bacteria or organisms offer benefit to what microbes from what rock minerals, I thought this article might interest the organic folks here. Maybe there is someone here who subscribes to "Physics Today" that can get us the full article.
http://blogs.physicstoday.org/newspicks/2011/02/subterranean-microbes-get-food.html
http://blogs.physicstoday.org/newspicks/2011/02/subterranean-microbes-get-food.html