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The Robbert.W.Allard Thread :)

englishrick

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Just To Start Things OFF ,,,,,,im going to post up a small biography for Mr Robbert W Allard,,,

hopefully we all learn a thing or 2 ...

thankyou for any contrabutions you guys might make during this thread,,,,thankyou for just being here :)












N A T I O N A L A C A D E M Y O F S C I E N C E S
R O B E R T W A Y N E A L L A R D
1 9 1 9 – 2 0 0 3


A Biographical Memoir by
M I C H A E L T . C L E G G

Any opinions expressed in this memoir are those of the author
and do not necessarily reflect the views of the
National Academy of Sciences.
Biographical Memoirs
COPYRIGHT 2006
NATIONAL ACADEMY OF SCIENCES
WASHINGTON, D.C.

ROBERT WAYNE ALLARD
September 3, 1919–March 25, 2003
BY MICHAEL T. CLEGG
ROBERT (“BOB”) WAYNE ALLARD made wide-ranging contributions
to both basic and applied plant genetics. He began
as a plant breeder and wrote one of the most successful
plant-breeding texts of his era, but his most important contributions
were in evolutionary genetics. He was a founder
of experimental plant population genetics and he infused
the field with high standards of experimental and theoretical
rigor. His investigations ranged from elegant experiments
to dissect the genetic factors responsible for quantitative
genetic variation, to the study of gene-environment
interactions, to the analysis of selection in long-term experimental
barley populations. But his most significant work
was encompassed in a series of papers on the genetics of
inbreeding populations, where he overturned conventional
dogma by showing that inbreeding plant populations have
substantial levels of genetic variation. In the course of his
work on inbreeding species, he turned to the characterization
of the genetics of wild and naturalized species and
contributed to the origins of the field of plant ecological
genetics. He was also a teacher par excellence, training more
than 50 Ph.D. students and an even larger number of
postdoctoral students over a career that spanned more than
4 BIOGRAPHICAL MEMOIRS
50 years, and he led the University of California, Davis,
Genetics Department to preeminence during the 1960s and
1970s.
EARLY INFLUENCES
Bob Allard was born in the San Fernando Valley of California
on September 3, 1919. In the years between the two
world wars the San Fernando Valley was largely pastoral
and Bob’s early years were spent on the family farm. Around
1930 his father relocated his farming operation to the San
Joaquin Valley about 15 miles west of Modesto. Like many
farmers of the era, Bob’s father cooperated with University
of California agricultural researchers by dedicating a portion
of his land to experimental trials. A UC Berkeley plant
breeder named W. W. Mackie maintained plots of lima and
common beans on the Allard farm, and Bob was assigned
the task of assisting Mackie with the maintenance of the
experimental plots. This turned out to be the formative
experience of Bob’s young life, because Mackie instilled in
Bob a lifelong fascination with the causes of phenotypic
variation. In an oral history interview, Bob much later recalled
that Mackie introduced him to the new science of
Mendelian genetics during this period, thereby contributing
to his later choice of scientific career.
In recounting these early experiences, Bob would passionately
describe the pleasure he took in listening to Mackie
and in hearing his theories about genetic variation and its
practical exploitation. Bob was not a man to dwell on the
past; he strongly preferred to look toward the future. His
occasional recollections of Mackie were exceptional and reflected
the enduring impact of this period on his later scientific
development. According to Bob’s much later memories,
Mackie was also interested in the ecological bases of
adaptation and he introduced Bob to other plant species
ROBERT WAYNE ALLARD 5
common in their Central Valley environment, including the
slender wild oat (Avena barbata) that would later feature
importantly in some of Bob’s research.
It seems likely that Mackie influenced Bob’s decision to
enter UC Davis as a student of agriculture in the fall of
1937. During his undergraduate years Bob worked as a student
assistant for Coit Suneson of the U.S. Department of
Agriculture, and this also had an enduring impact on Bob.
Suneson, along with Harry Harlan and Gus Wiebe, was engaged
in developing bulk populations of wheat and barley,
known as composite cross populations. The theory at the
time was that bulk populations would both act as a reservoir
for useful genetic variation while at the same time evolving
toward greater adaptation under standard agricultural
conditions. Years later Bob would use these composite cross
populations as a powerful resource for studies in experimental
population genetics. These early experiences did
much to define Bob’s approaches to plant genetics and
they serve to illustrate the powerful impact that scientific
mentors can have on young minds.
After finishing his undergraduate training, Bob entered
the graduate program at the University of Wisconsin, Madison.
Certainly the biggest thing that happened to him at
Madison was meeting and marrying Ann, his wife of 59
years. On the rare occasions when Bob would talk about his
graduate school days, his chief recollection was being called
into World War II service just prior to the scheduled date
for his final dissertation defense. It seems that the university
would not reschedule the defense, and Bob had to return
to Madison after the war to defend his thesis. Bob’s
Ph.D. research was on wheat cytogenetics, and aside from
publishing his dissertation work following the war, he never
returned to this topic. There were strong influences at Madison,
including Rubush G. Shands (his major professor),
6 BIOGRAPHICAL MEMOIRS
Charles E. Allen, and R. A. Brink, but I always had the
feeling that Bob had a clear idea of his future research
directions by the time he left Davis.
After entering World War II service, Bob was sent to
the Naval Supply School at Harvard. Later he was assigned
to a research unit at Fort Detrick, Maryland, where he was
engaged in work on biowarfare, a subject he never discussed,
except to say that he had been in a research unit for part of
the war. Still, this provided Bob’s only postdoctoral training
and broadened his research experience.
In 1946 Bob returned to UC Davis as assistant professor
of agronomy and assistant geneticist in the Agricultural Experiment
Station, and he remained at Davis affiliated with
the Agronomy Department throughout his career. He was
hired as a bean breeder and his particular focus was on the
improvement of the lima bean. At that time Davis was a
branch of the Berkeley College of Agriculture and had little
autonomy. It was also a very small school with fewer than
800 students, most of whom were there for two-year terminal
degrees in agriculture. Bob was an important player in
a faculty generation that turned Davis from a small satellite
agriculture campus into a thriving and world-renowned university.
From the beginning Bob’s work blended both basic genetics
and practical plant improvement. In the initial years
he focused on both the identification of disease-resistance
genes and applications of the backcross method of breeding
for the incorporation of disease resistance into elite
lines of lima beans. The search for disease resistance genes
led to an extended field trip to Central and South America
to collect wild relatives and primitive land race materials as
genetic resources for future breeding efforts. He later published
an article for the California Dry Bean Research Conference
on plant exploring in Latin America. The conservaROBERT
WAYNE ALLARD 7
tion of genetic resources remained an abiding interest, one
that was communicated to a number of Bob’s students.
At heart Bob was a geneticist, and along with his practical
work on lima bean improvement, he began to develop
genetic markers in lima beans. These were largely seed coat
markers based on an amazing range of seed coat color patterns.
Bob and his early students patiently dissected the
inheritance of these discrete color polymorphisms and then
employed them as markers to study adaptive change in the
lima bean. A particularly fascinating aspect of the color
patterns was the interactions between different genetic factors
that lead to the mosaic patterns evident on the seed
coats. We learn and generalize from our empirical experiences,
and these are based on the materials that we choose
to study. In Bob’s case the theme of gene interaction, based
in part on his observations of seed coat color patterns in
the lima bean, continued to dominate his thinking throughout
his career.
The practical side of Bob’s program prospered in these
early years. He released a number of new varieties of lima
beans; one variety, “Mackie,” was named for his childhood
mentor. He also began work on a novel plant-breeding text.
The book, Principles of Plant Breeding, published in 1960
had an enormous impact and was ultimately translated into
17 languages. It remained the premier plant-breeding text
for a generation. The book was novel because it emphasized
genetic principles rather than methods and this contributed
to its great success. Bob was also a very fine writer
and this, too, contributed to the wide acceptance of Principles
of Plant Breeding. He took great pains with everything
he wrote, and the result was always a model of clarity
and precision. Bob would not put his name on a paper
until he had worked through it carefully, reanalyzed the
data, and improved the exposition. He did not believe in
8 BIOGRAPHICAL MEMOIRS
honorary authorships and he was very economical with citations.
His practice was to cite only essential supporting papers.
For many years Bob’s plant-breeding colleagues urged
him to write a second edition of Principles of Plant Breeding,
and he promised to do so, but it was not until 1999,
almost 15 years after Bob’s retirement and just four years
before his death that a second edition was published. Bob
admitted that the second edition was really an entirely new
book that contained little carried over from the parent book
published 39 years earlier. The second book is really a plant
population genetics book that synthesizes a life’s study of
plant evolution. It is uniquely Bob, both in the lucidity of
the writing and in the presentation and articulation of his
vision of evolutionary genetics.
QUANTITATIVE GENETICS
The field of quantitative genetics had a large impact on
agricultural research in the 1940s and 1950s. The origins of
quantitative genetics derive from R. A. Fisher’s 1918 paper
reconciling Mendelian genetics and Darwinian evolution
by natural selection. Quantitative, or biometrical, genetics
aims to partition phenotypic variation into genetic and environmental
components and it provides a scientific basis
for designing efficient schemes for selection. In later years
Bob recalled that while a student at Wisconsin, he had been
influenced by Sewall Wright, who along with R. A. Fisher
was the other great architect of the field of quantitative
genetics. It is clear from Bob’s later recollections that he
was anxious to move beyond lima bean breeding by mastering
the skills of quantitative genetics. During the academic
year 1954-1955, Bob found the opportunity to hone his skills
in statistics and quantitative genetics by taking a year’s sabbatical
leave in Birmingham, England, to work with KenROBERT
WAYNE ALLARD 9
neth Mather, one of the era’s leaders in quantitative genetics.
A few years later, in 1960, he returned to England to
work at Oxford with Norman J. T. Bailey, a leading statistician
in the field of mathematical genetics. These sabbaticals
had an enduring impact on Bob’s research directions.
In the middle 1950s Bob began to publish papers that
attacked various biometrical issues of the day. One paper
was devoted to maximum likelihood estimators for recombination,
others focused on the analysis of various diallele
crosses, and still others concerned the problem of estimating
gene-environment interactions. He began publishing
more frequently in broadly based genetics journals rather
than in agricultural journals so that his papers would reach
a broader audience of geneticists. He also continued to
publish on applied topics throughout his career. One paper
of this period that deserves special mention is an elegant
dissection of the genetics of heading time in wheat
(1965). In this paper Bob showed that a major gene controlled
heading date, but he went beyond this to show how
the remaining phenotypic variation in heading date could
be resolved into additional genetic components, revealing
the influence of multiple genetic factors of unequal effect.
The paper pushed the approaches of quantitative genetics
to their experimental limits. By this time Bob’s research
had evolved beyond the lima bean to exploit other plant
species more appropriate for investigating basic questions
of quantitative genetics. By the early 1960s Bob’s lab was
regarded as a leading lab for the study of plant quantitative
genetics. Even as he achieved this goal, Bob was moving in
new directions.
THE GENETICS OF INBREEDING POPULATIONS
Stimulated in part by his colleague G. Ledyard Stebbins,
Bob began to investigate the genetics of inbreeding spe10
BIOGRAPHICAL MEMOIRS
cies. In his classic 1950 book, Variation and Evolution in
Plants, Stebbins had claimed that inbreeding plant populations
should be largely devoid of genetic variation. The
argument put forward by Stebbins was that inbreeding leads
to homozygosity and the superior inbred type should outcompete
all other lines leading to a homogeneous population.
Bob knew from his plant-breeding experiences that
inbreeding crops, such as lima beans, had large stores of
genetic variation and showed rapid genetic responses to
selection. Stebbins had repeated what was the conventional
dogma of the time, but this provided the stimulus for Bob
to begin what became a classic series of experiments to
characterize genetic variation in inbreeding plant species.
Stebbins, for his part, encouraged this effort to look more
deeply at the genetics of inbreeding species. The quest led
Bob into an entirely new field, ecological genetics, which
sought to combine population genetics with ecology, where
Bob played a foundational role. It also began a series of
papers on population studies in predominantly self-pollinated
species that spanned a period of more than 20 years.
The studies of inbreeding populations led Bob from
quantitative genetics into population genetics. Bob quickly
established the leading program on plant population genetics
of the 1960s, and he and his students found novel
ways of approaching the fundamental questions of this field.
One important innovation harked back to the composite
cross populations of his early undergraduate days. At the
time, population genetics was dominated by Drosophila, partly
because the short generation time of Drosophila permitted
experiments over many generations, thereby allowing the
direct observation of evolutionary changes in gene frequencies.
Bob had become the custodian of the composite cross
populations, and he quickly realized that the populations
he had helped synthesize in his youth would allow a mulROBERT
WAYNE ALLARD 11
tiple generation approach in longer-lived annual plant species
as well. The basic reason rested on the fact that seed
could be stored over a number of years, allowing an investigator
to analyze gene frequencies in past generations. To
see how this worked it is necessary to describe the system
for propagating the composite cross populations. The practice
was to advance the populations each year by growing a
new generation under standard agricultural conditions at
Davis, while also storing a portion of seed from each year’s
harvest for several years. The saved seed would then be
rejuvenated by growing out a new generation every five years
or so. This provided a parallel series of populations that
represented early, intermediate, and late generations. By
the early 1960s the oldest populations had about a 30-year
history and the youngest had a history of only five or six
generations. Because of this scheme, the barley and wheat
composite cross populations provided a unique resource to
follow changes in phenotypic traits, gene frequencies, and
disease resistance loci over 30 or more generations.
Bob used every tool available to study genetic change in
the composite cross populations, beginning with simple
morphological polymorphisms and quantitative characters
and moving on to isozymes and finally to restriction fragment
length polymorphisms (RFLPs) near the end of his
career. Bob was among the first to adopt the isozyme method
when it appeared in the middle 1960s. Isozymes had an
enormous impact, because for the first time they allowed
the investigator to sample a large number of genes that
coded for various enzymatic proteins. Prior to this, students
of population genetics were limited to morphological variants,
such as the seed coat color polymorphisms of lima
bean or to quantitative traits where the underlying genes
were impossible to resolve. Isozymes allowed one to sample
many individual gene products and to ask questions about
12 BIOGRAPHICAL MEMOIRS
genome-wide levels of genetic variation. RFLPs offered the
advantages of isozymes while also permitting the investigator
to measure variation for portions of the genome that do
not code for enzymatic proteins. Throughout his career
Bob was always among the first to adopt new approaches to
address scientific questions. He was undaunted by obstacles
or by the investment of effort associated with acquiring new
technologies.
Regardless of the experimental approach employed in
studying the composite cross populations, substantial changes
in trait or gene frequencies were always observed over time,
and these were too large to be ascribed to genetic drift,
leaving selection as the only plausible explanation. The next
natural question was, could selection be quantified at individual
loci? Theodosius Dobzhansky and Sewall Wright had
developed approaches to the quantification of selection on
inversion polymorphisms in Drosophila pseudoobscura, but
these depended on the assumption of random mating. The
basic estimation technique was to derive transition equations
that predicted genotypic frequencies in one generation
based on their frequencies in previous generations after
accounting for the mating process. A set of weights that
mapped the predicted frequencies onto the observed frequencies
quantified the strength of selection.
Barley is a predominantly self-fertilizing plant, so the
random mating assumption could not be employed. A quantitative
theory of mating and a method to estimate the parameters
of such a quantitative model was required. A quantitative
theory, known as the mixed-mating model, which
allowed for a mixture of self-fertilization and random outcrossing,
had been published in 1951 by Fyfe and Bailey
(the same Bailey that Bob had worked with on sabbatical in
Oxford, England). Bob and his students employed this model
to estimate the single outcrossing parameter that indexed
ROBERT WAYNE ALLARD 13
the mixed-mating model and to derive transition equations
to estimate selection in the composite cross and other populations.
The technique for estimating the proportion of outcrossing
relied on another important property of plants;
the fact that one can easily collect numerous progeny of a
single maternal plant as seed. With the use of marker genes
it was possible to estimate the fraction of self-fertilization
and its complement—the fraction of outcrossing—from family
structured data.
Armed with a quantitative characterization of the mating
process one could quantify selection at individual marker
loci. But self-fertilization has another important consequence
that rendered it impossible to attribute selection to the marker
loci actually observed. Because self-fertilization leads to
homozygosity, effective recombination is greatly reduced and
any statistical associations among different loci decay slowly
over time. Populations like the composite cross populations,
with a relatively short history, would still retain statistical
associations between loci from their initial composition. Bob
and his students initiated the theoretical study of the behavior
of linkage disequilibrium (the technical term for
correlations between loci in allelic state) in mixed-mating
systems in the middle 1960s. At a time when computer simulations
were just beginning to be applied to genetic problems,
they published an important simulation study describing
the complex behavior of linkage disequilibrium in predominantly
self-fertilizing populations. Later estimates of the
magnitude of linkage disequilibrium in the composite cross
and other populations showed that it was typically large.
The conclusion was that chromosomal segments containing
the marker loci were subject to strong selection in virtually
all observed cases, but that one could not resolve selection
to the level of individual loci.
14 BIOGRAPHICAL MEMOIRS
Bob was not satisfied with the study of artificial populations.
The question he sought to answer was the broader
question concerning levels of genetic diversity in inbreeding
populations of plants in nature. By the early 1960s he
had launched a program to study natural populations of
inbreeding plants, and this work included a broad variety
of species, including Avena species (wild oats), other grasses
native to California, such as fescue, and annual native California
dicots, such as Collinsia species. These efforts began
an intensive period of ecological genetics research that
spanned nearly two decades. Avena barbata, the slender
wild oat, was a particular target of investigation during this
period. A. barbata is a naturalized component of the California
oak savannah that was introduced into California
during the Spanish Mission period from the Mediterranean
basin (almost certainly from Spain). The time dimension is
known, and this meant that genetic changes over a twohundred-
to three-hundred-year period could be documented.
Near the end of his life Bob recalled having been introduced
to Avena barbata by W. W. Mackie; once again
this powerful early influence determined a scientific direction,
and it was a fortunate choice, because A. barbata showed
markedly different patterns of evolution in different regions
of California. As later shown by two of Bob’s Spanish students
(Marcelino Perez de la Vega and Pedro Garcia Garcia),
these changes were not replicated in Spain, so they must
have arisen since the introduction of A. barbata to California.
Particularly dramatic were contrasting patterns of isozyme
variation between the foothills of the arid Central Valley of
California and the cooler and moister intermontane valleys
of the costal strip. The arid regions were nearly monomorphic
for a single multilocus genotype, while populations
from the coastal regions exhibited substantial levels of variROBERT
WAYNE ALLARD 15
ability. I was fortunate to play a role in these findings, and
it was a wonderful way to start a research career.
INTERACTING GENETIC SYSTEMS
A pervasive theme of Bob’s research and writing was the
importance of interactions among genes, between genes
and environments, and even among genotypes within populations.
Bob believed that context was essential and that
marginal effects were less important. I recall Bob attributing
this belief in the importance of interactions to his early
mentor W. W. Mackie. Regardless of the source, it clearly
dominated Bob’s thinking. This view went counter to conventional
population genetics theory that is based on the
notion that complex systems can be characterized by marginal
gene frequency changes. It also went counter to quantitative
genetics theory where additive effects were thought
to account for most variation. To this day the importance
of interaction remains an open question.
Beginning in the middle 1950s, Bob published experimental
work on gene environmental interactions. In the
1960s he turned to the problem of interactions among genes
at different loci. His approach of measuring linkage disequilibrium
as a surrogate for gene interactions was stimulated
by the theoretical calculations of R. C. Lewontin and
K. Kojima giving the precise relationship between selection
and recombination required for nonzero linkage disequilibria.
These highly simplified models showed that only nonadditive
selection over loci could retard recombination and
maintain permanent linkage disequilibrium. Thus Bob focused
on the estimation of linkage disequilibria in experimental
plant populations as a means of detecting interactions.
It later became clear that the existence of linkage
disequilibrium is neither necessary nor sufficient for the
existence of interlocus interactions, especially in inbreed16
BIOGRAPHICAL MEMOIRS
ing systems. Despite this, Bob did show that correlations
among loci could be pervasive in inbreeding plant populations
and that this would in turn affect their evolutionary
potential.
Together with his students, Bob studied the impact of
neighboring genotypes on the fitness of individual plants.
This system of intergenotypic interactions creates a frequency
dependent pattern of selection and widens the conditions
for the maintenance of a genetic polymorphism. As with
much of Bob’s work, theoretical calculations were supplemented
by direct measurements from experimental populations
to provide a predictive framework. Bob was also a
strong proponent of the idea that genetic mixtures would
perform better than single pure lines in an agricultural
context, although the evidence to support this view has been
meager.
A LIFE’S ACCOMPLISHMENTS
As noted above, Bob worked in, and in some cases helped
found, several distinct but related areas of plant genetics.
He had an enduring impact on plant breeding, largely
through his book but also through his early work in biometrical
genetics. These contributions were later recognized
through the DeKalb-Pfizer distinguished career award of
the Crop Science Society and the Crop Science Award of
the American Society of Agronomy. Bob was elected to the
National Academy of Sciences in 1973, where he chose to
affiliate with the genetics section and later with the section
on population biology, evolution, and ecology after it was
formed, rather than with the agricultural sections. This choice
illustrates that his first love was genetics, despite a lifelong
devotion to agriculture.
More than any other worker, Bob Allard is responsible
for laying the rigorous experimental foundations for plant
ROBERT WAYNE ALLARD 17
population genetics, and he played a major role in melding
the union of ecology and genetics that emerged as ecological
genetics. Perhaps his most enduring scientific legacy
was the series on population studies in predominantly selfpollinated
species. This series illustrated one of Bob’s greatest
strengths. He was first and foremost an empiricist who found
innovative ways to test theory and to expand our empirical
understanding of genetic systems. His belief in interaction
ran counter to the dogma of his time and often led to
intense arguments, but he never modified his views. He was
passionate about his scientific views and at times the strength
of his convictions seemed to overwhelm the available evidence.
In retrospect, his intuition was excellent and his
views have been largely vindicated.
Bob was a prolific teacher and mentor of graduate and
postdoctoral students. Altogether he trained 56 Ph.D.
students, and he hosted numerous visiting scientists and
postdoctoral students; he also trained a host of M.S. students.
He had a large number of international students,
and many have become prominent figures in countries
around the world. I recall students from all continents, and
as a consequence he left a global intellectual legacy. He
taught throughout his long tenure at UC Davis in both the
Department of Agronomy and the Department of Genetics.
He wrote a wonderful set of lecture notes on population
genetics that were used in the introductory genetics course
at Davis. During the late 1960s, I encountered his lecture
notes as an undergraduate and immediately decided I wanted
to study population genetics. He also taught in the introductory
genetics course for many years as well as a graduate
course in quantitative genetics and an undergraduate course
in population genetics. He was not a classroom performer,
but his lectures, like his writing, were clear and carefully
organized to make a central point.
18 BIOGRAPHICAL MEMOIRS
Around 1967 Bob became chair of the Department of
Genetics at UC Davis, where he served with energy and
skill. He played a major role in bringing Th. Dobzhansky
and F. J. Ayala to Davis in the early 1970s and helped catapult
the Department of Genetics to international preeminence.
At its peak the department included among its faculty
five members of the National Academy of Sciences. He
also served on virtually every major committee of the university
and for a period chaired the Davis division of the
UC Academic Senate. Bob was an active member of the
National Academy Sciences, where he chaired Section 27
for three years. He served on a number of National Research
Council committees, including a committee that produced
several volumes on managing global genetic resources.
He was unstintingly generous with his time, and he served
the university and the academy he loved with great devotion.
Bob retired in 1986 but remained very active. He published
a remarkable number of research papers during his
retirement, along with the new edition of his classic plantbreeding
book. During this period, Bob and Ann Allard
spent much of their time at their home at Bodega Bay on
the northern California coast. He loved walking on the seaside
cliffs examining plants, especially Avena barbata, and
speculating about their unique adaptations to the California
environment. He was always eager to entertain friends
and colleagues; evenings with the Allards at Bodega Bay
were very special events. Bob loved wine and was an accomplished
student and collector of fine wines, so any dinner
was resplendent with excellent wine. Bob finally had to leave
his Bodega Bay home about two years before his death,
owing to the onset of Alzheimer’s disease and circulatory
difficulties. He died on March 25, 2003, in Davis at the age
of 83.
ROBERT WAYNE ALLARD 19
SELECTED BIBLIOGRAPHY
1946
With H. R. DeRose and R. J. Weaver. Some effects of plant growth
regulators on seed germination and seedling development. Bot.
Gaz. 107:575-583.
1954
With R. G. Shands. The inheritance of resistance to stem rust and
powdery mildew in cytologically stable wheats derived from Triticum
timopheevi. Phytopathology 44:266-274
1956
The analysis of genic-environmental interactions by means of diallele
crosses. Genetics 41:305-318.
1960
Principles of Plant Breeding. New York: Wiley.
With S. K. Jain. Population studies in predominantly self-pollinated
species. I. Evidence for heterozygote advantage in a closed population
of barley. Proc. Natl. Acad. Sci. U. S. A. 46:1371-1377.
1963
With P. L. Workman. Population studies in predominantly self-pollinated
species. III. A matrix model for mixed selfing and random
outcrossing. Proc. Natl. Acad. Sci. U. S. A. 48:1318-1325.
1964
With J. Weil. The mating system and genetic variability in natural
populations of Collinsia heterophylla. Evolution 18:515-525.
1965
With C. Wehrhahn. The detection and measurement of the effects
of individual genes involved in the inheritance of a quantitative
character in wheat. Genetics 51:109-119.
20 BIOGRAPHICAL MEMOIRS
1966
With J. Harding and D. G. Smeltzer. Population studies in predominantly
self-pollinated species. IX. Frequency dependent selection
in Phaseolus lunatus. Proc. Natl. Acad. Sci. U. S. A. 56:99-104.
1967
With S. K. Jain and P. L. Workman. The genetics of inbreeding
populations. Adv. Genet. 14:55-131.
1970
With A. H. D. Brown. Estimation of the mating system in open
pollinated maize populations using isozyme polymorphisms. Genetics
66:133-145.
1972
With J. L. Hamrick. Microgeographical variation in allozyme frequencies
in Avena barbata. Proc. Natl. Acad. Sci. U. S. A. 69:2000-
2004.
With B. S. Weir and A. L. Kahler. Analysis of complex allozyme
polymorphisms in a barley population. Genetics 72:505-523.
1973
With M. T. Clegg. Viability versus fecundity selection in the slender
wild oat Avena barbata L. Science 181:667-668.
1977
With W. T. Adams. The effect of polyploidy on phosphoglucose
isomerase diversity in Festuca microstachys. Proc. Natl. Acad. Sci.
U. S. A. 74:1652-1656.
1981
With D. V. Shaw and A. L. Kahler. A multilocus estimator of mating
system parameters in plant populations. Proc. Natl. Acad. Sci. U.
S. A. 78:1298-1302.
1982
With O. Muona and R. K. Webster. Evolution of resistance to
Rhynchosporium secalis (Oud.) Davis in barley Composite Cross
II. Theor. Appl. Genet. 61 209-214.
ROBERT WAYNE ALLARD 21
1984
With M. A. Saghai Maroof, R. A. Jorgensen, and K. Soliman. Ribosomal
DNA (rDNA) spacer-length (sl) variation in barley: Mendelian
inheritance, chromosomal location, and population dynamics.
Proc. Natl. Acad. Sci. U. S. A. 81:8014-1018.
1987
With D. B. Wagner, G. K. Furnier, M. A. Saghai Maroof, S. M.
Williams, and B. P. Dancik. Chloroplast DNA polymorphisms in
lodgepole and jack pines and their hybrids. Proc. Natl. Acad. Sci.
U. S. A. 84:2097-2100.
With Q. Zhang and R. K. Webster. Geographical distribution and
associations between resistance to four races of Rhynchosporium
secalis. Phytopathology 77:352-357
1989
With B. K. Epperson. Spatial autocorrelation analysis of the distribution
of genotypes within populations of lodgepole pine. Genetics
121:369-377.
With P. Garcia, F. J. Vences and M. Perez de la Vega. Allelic and
genotypic composition of ancestral Spanish and colonial Californian
gene pools of Avena barbata: Evolutionary implications.
Genetics 122:687-694
1991
With D. B. Wagner. Pollen migration in predominantly self-fertilizing
plants: Barley. J. Hered. 32:302-304
1999
Principles of Plant Breeding. 2nd ed. New York: Wiley
 

englishrick

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"Wall of text crits you for 500"


what bro?,,,,,,,,^^^ i cant make head nor tale of what your sayin

sounds criptic too me:)
 

englishrick

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LEARNING THE LINGO:),,,,Allard had his own language:)

LEARNING THE LINGO:),,,,Allard had his own language:)

GLOSSARY





Terms from Allard, “Principles of Plant Breeding”





Adaptation: The process by which individuals (or parts of individuals), populations, or species change form or function in such a way to better survive under given environmental
conditions. Also the result of this process.


Allele or Allelomorph: One of a pair or series of forms of a gene which are alternative in
inheritance because they are situated at the same locus in homologous
chromosomes.


Asynapsis: Failure of pairing of homologous chromosomes during meiosis.


Autogamy: Self-fertilization.


Avirulent: Inability of a pathogen to produce a disease on its host.


Backcross: a cross of a hybrid to either of its parents. In genetics, a cross of a
heterozygote toa homozygous recessive. (See test cross)


Backcross Breeding: A system of breeding whereby recurrent backcrosses are made to one of the parents of a hybrid, accompanied by selection for a specific character or
characters.



Balance: The condition in which genetic components are adjusted in proportions that give
satisfactory development. Balance applies to individuals and populations.


Basic Number: The number of chromosomes in ancestral diploid ancestors of polyploids,
represented by x.


Biotype: A group of individuals with the same genotype. Biotypes may be homozygous or
heterozygous.


Bivalent: A pair of homologous chromosomes united in the first meiotic division.


Breeder Seed: Seed produced by the agency sponsoring a variety and used to produce
foundation seed.


Breeding: The art and science of changing plants or animals genetically.


Bulk Breeding: The growing of genetically diverse populations of self-pollinated crops in a bulk plot with or without mass selection, followed by single-plant selection.


Certified Seed: Seed used for commercial crop production produced from foundation,
registered, or certified seed under regulation of a legally constituted agency.


Centromere: (See kinetochore)


Character: An attribute of an organism resulting from the interaction of a gene or genes withthe environment.


Chiasma: An exchange of partners between paired chromatids in the first division of meiosis.


Chromatid: One of two threadlike structures formed by the longitudinal division of a chromosome during meiotic prophase and known as a daughter chromosome during anaphase.


Chromosomes: Structural units of the nucleus which carry the genes in linear order. Chromosomes undergo a typical cycle in which their morphology changes
drastically in various phases of the life cycle of the organisms.


Clone: A group of organisms descended by mitosis from a common ancestor.
Combining Ability: General, average performance of a strain in a series of crosses. Specific,
deviation from performance predicted on the basis of the general
combining ability.


Coupling: Linked recessive alleles occur in one homologous chromosome and their dominant
alternatives occur in the other chromosome. Opposed to repulsion in which one
dominant and one recessive occur in each member of the pair of homologous
chromosomes.


Crossing Over: The exchange of corresponding segments between chromatids of homologous chromosomes during meiotic prophase. Its genetic consequence is the
recombination of linked genes. Diallel Cross, Complete: The crossing in all possible combinations of a series of genotypes.


Dihybrid: Heterozygous with respect to two genes.


Dioecious: Plants in which staminate and pistillate flowers occur on different individuals.


Diploid: An organism with two chromosomes of each kind.


Diplotene: The stage of meiosis which follows pachytene and during which the four
chromatids of each bivalent move apart in two pairs but remain attached in the region of the chiasmata.


Disease: A departure from normal metabolism and a reduction of its normal potential for
growth and reproduction.


Disjunction: The separation of chromosomes at anaphase.


Dominance: Intra-allelic interaction such that one allele manifests itself more or less, when
heterozygous, than its alternative allele.


Donor Parent: The parent from which one or a few genes are transferred to the recurrent parent in backcross breeding.


Double Cross: A cross between two F1 hybrids.


Emasculation: Removal of the anthers from a flower.


Epistasis: Dominance of one gene over a non-allelic gene. The gene suppressed is said to be hypostatic. More generally, the term epistasis is used to describe all types of
interallelic interaction whereby manifestation at any locus is affected by genetic
phase at any or all loci.


Epiphytotic: An unarrested spread of a plant disease.


Expressivity: The degree of manifestation of a genetic character.


F1: The first generation of a cross.


F2: The second filial generation obtained by self-fertilization or crossing F1 individuals.


F3: Progeny obtained by self-fertilization of F2 individuals.


Factor: Same as gene.


Facultative: Parasites which can grow and live in environments other than living host tissue.


Family: A group of individuals directly related by descent from a common ancestor.


Fertility: Ability to produce viable offspring.


Fertilization: Fusion of the nuclei of male and female gametes.


Foundation Seed: Seed stock produced from breeder seed under the direct control of an
agricultural experiment station. Foundation seed is the source of certified
seed, either directly or through registered seed.


Gamete: Cell of meiotic origin specialized for fertilization.


Gene: The unit of inheritance. Genes are located at fixed loci in chromosomes and can
exist in a series of alternative forms called alleles.


Gene Frequency: The proportion in which alternative alleles of a gene occur in a population.


Gene Interaction: Modification of gene action by a non-allelic gene or genes.


Germplasm: The sum total of the hereditary materials in a species.


Genome: A set of chromosomes corresponding to the haploid set of a species.


Genotype: The entire genetic constitution of an organism.


Haploid: A cell or organism with the gametic chromosome number (n).


Heritability: The proportion of observed variability which is due to heredity, the remainder
being due to environmental causes. More strictly, the proportion of observed
variability due to the additive effects of genes.


Heterosis: Hybrid vigor such that an F1 hybrid falls outside the range of the parents with
respect to some character or characters. Usually applied to size, rate of growth, or
general thriftiness.


Heterozygous: Having unlike alleles at one or more corresponding loci (opposite of
homozygous). Homology of Chromosomes: Applied to whole chromosomes or parts of chromosomes which synapse or pair in meiotic prophase.


Host Resistance: The result of genetic manipulation of the host which renders it less susceptible to pathogens that would or do attack the host.


Hybrid: The product of a cross between genetically unlike parents.
I1, I2, I3... Symbols that are used to designate first, second, third, etc. inbred generations.


Inbred Line A line produced by continued inbreeding. In plant breeding, a nearly homozygous line usually originating by continued self-fertilization, accompanied by selection.


Inbreeding: The mating of individuals more closely related than individuals mating at random.


Independence: The relationship between variables when the variation of each is uninfluenced by that of others, that is, correlation of zero.


Isogenic Lines: Two or more lines differing from each other genetically at one locus only.
Distinguished from clones, homozygous lines, identical twins, etc. which are
identical at all loci.


Isolation: The separation of one group from another so that the mating between or among
groups is prevented.


Kinetochore: Spindle attachment. A localized region in each chromosome to which the “spindle fiber” appears to be attached and which seems to determine movement of the
chromosomes during mitosis and meiosis.


Line Breeding: A system of breeding in which a number of genotypes, which have been
progeny tested in retrospect to some character or group of characters, are
composited to form a variety.


Linkage: Association of characters in inheritance due to location of genes in proximity on
the same chromosome.


Linkage Map: Map of position of genes in chromosomes determined by recombination
relationships.


Linkage Value: Recombination fraction expressing the proportion of crossovers versus parental types in a progeny. The recombination fraction can vary from zero to one half.


Locus: The position occupied by a gene in a chromosome.


M1, M2, M3... Symbols used to designate first, second, third, etc. generations after treatment with a mutagenic agent.


Male Sterility: Absence or non-function of pollen in plants.


Mass-Pedigree Method: A system of breeding in which a population is propagated in mass until conditions favorable for selection to occur, after which pedigree
selection is practiced.


Mass Selection: A form of a selection in which individual plants are selected and the next
generation is propagated from the aggregate of their seeds.


Mating System: Any number of schemes by which individuals are assorted in pairs leading to sexual reproduction.

Random; assortment of pairs is by chance. Genetic assortative mating; mating together of individuals more closely related than individuals mating at random.

Genetic disassortative mating; mating together of individuals less closely related than individuals mating at random.


Phenotypic assortative mating; mating individuals more alike in appearance
than the average.

Phenotypic disassortative mating; mating of individuals less
alike in appearance than individuals mating at random.


Meiosis: A double mitosis occurring in sexual reproduction which results in production of
gametes with haploid (n) chromosome number.


Metaphase: The stage of meiosis or mitosis at which the chromosomes lie on the spindle.


Mitosis: The process by which the nucleus is divided into two daughter nuclei with
equivalent chromosome complements, usually accompanied by division of the cell
containing the nucleus.


Modifying Genes: Genes that affect the expression of a non-allelic gene or genes.


Monoecious: Staminate and pistillate flowers born separately on the same plant.


Mutation: A sudden heritable variation in a gene or in a chromosome structure.


Obligate: Parasite that cannot multiply in nature without a host.

Oliogenic Resistance: Resistance determined by one or few genes whose effects are readily detectable.


Outcross: A cross, usually natural, to a plant of different genotype.


Pachytene: The double-thread or four strand stage of meiosis.


Parasite: Lives in or on another organism and obtains nutrients from it.


Parthenogenesis: Development of an organism from a sex cell in respect to some characteristic.


Parameter: A numerical quantity which specifies a population in respect to some
characteristic.


Pathogen: A parasite which produces disease in its host.


Pedigree: A record of the ancestry of an individual, family, or strain.


Pedigree Breeding: A system of breeding in which individual plants are selected in the
segregating generations from a cross on the basis of their desirability judged
individually and on the basis of a pedigree record.


Penetrance: The frequency with which a gene produces a recognizable effect in the individuals which carry it.


Phenotype: Appearance of an individual as contrasted with its genetic make-up or genotype. Also, used to designate a group of individuals with similar appearance but not
necessarily identical genotypes.


Phytolexins: Substances produced or formed by host plants in response to injury, physiological stimuli, infectious agents, or their products that accumulate to levels which inhibit the growth of microorganisms. Some include toxic substances produced to repel
insects and nematodes.


Polycross: Open pollination of a group of genotypes (generally selected), in isolation from
other compatible genotypes, in such a way as to promote random mating.


Polygenic: Determined by several genes whose effects are readily detectable.


Populations: In genetics, a community of individuals which share a common gene pool. In
statistics, a hypothetical and infinitely large series of potential observations among
which observations may actually constitute a sample.


Progeny Test: A test of the value of a genotype based on the performance of its offspring
produced in some definite system of mating.


Protandry: Maturation of anthers before pistils.


Protogyny: Maturation of pistils before anthers.


Pure Line: A strain homozygous at all loci, ordinarily obtained by successive self-fertilizations in plant breeding.


Qualitative Character: A character in which variation is discontinuous.


Quantitative Character: A character in which variation is continuous so that classification into discrete categories is not possible.


Random: Arrived at by chance without discrimination.


Randomization: Process of making assignments at random.


Recessive: The member of an allelic pair which is not expressed when the other (dominant)
member occupies the homologous chromosome.


Reciprocal Crosses: Crosses in which the sources of the male and female gametes are reversed.


Recombination: Formation of new combinations of genes as a result of segregation in crosses between genetically different parents. Also, the rearrangement of linked genes
due to crossing over.


Recurrent Parent: The parent to which successive backcrosses are made in backcross breeding.


Recurrent Selection: A method of breeding designed to concentrate favorable genes scattered among a number of individuals by selecting, each generation, among the
progeny produced by matings of the selected individuals (or their
selfed progeny) of the previous generation.


Registered Seed: The progeny of foundation seed normally grown to produce certified seed.


Rogue: A variation from the standard type of a variety or strain. Roguing; removal of
undesirable individuals to purify a stock.



Resistance: The restriction of development of a pathenogenic agent or parasite. Can vary in degree from immunity (no development) to only slight retardation relative to a socalled
susceptible reaction.


S1, S2, S3... Symbols for designating first, second, third, etc. selfed generations from an
ancestral plant (S0).


Segregation: Separation of paternal from maternal chromosomes at meiosis and consequent separation of genes leading to the possibility of recombination in the offspring.
Selection: In genetics, discrimination among individuals in the number of offspring
contributed to the next generation. In statistics, discrimination in sampling leading
to bias. Opposed to randomness.


Self-Fertilization: Fusion of male and female gametes from the same individual.


Self-Incompatibility: Genetically controlled physiological hindrance to self-fruitfulness.


Single Cross: A cross between two genotypes, usually two inbred lines, in plant breeding.


Species: The unit of taxonomic classification into which genera are subdivided. A group of
similar individuals different from other similar arrays of individuals. In sexually
reproducing organisms, the maximum interbred group isolated from other species
by barriers of sterility or reproductive incapacity.


Strain: A group of similar individuals within a variety.


Synapsis: Conjugation at pachytene and zygotene of homologous chromosomes.


Synthetic Variety: A variety produced by crossing a number of genotypes selected for
good combining ability in all possible hybrid combinations, with subsequent
maintenance of the variety by open pollination.


Telophase: The last stage in cell division before the nucleus returns to a resting condition.


Tetraploid: An organism with four basic (x) sets of chromosomes.


Top Cross: A cross between a selection, line, clone, etc., and a common pollen parent which may be a variety, inbred line, single cross, etc. The common pollen parent is called
the top cross or tester parent. In corn, a top cross is commonly an inbred-variety cross.


Transgressive Segregation: Appearance in segregating generations of individuals falling
outside the parental range in respect to some character.


Translocation: Change in position of a segment of a chromosome to another location in the
same or different chromosomes.



Variation: The occurrence of differences among individuals due to differences in their genetic composition and/or the environment in which they were raised.


Variety: A subdivision of a species. A group of individuals within a species which are
distinct in form or function from other similar arrays of individuals.


Virulence: Capacity of a pathogen to incite a disease.


x: Basic number of chromosomes in a polyploid series.


X1, X2, X3... Symbols denoting first, second, third, etc. generations from and irradiated ancestral plants (X0).


Zygote: Cell formed by the union of two gametes and the individual developing from this
cell.


Zygotene: A stage in meiotic prophase when the threadlike chromosomes pair.


EU: Good.


Pro: Before, in front of, in anticipation of.


Karyo or Caryo: Greek origin meaning kernel or nut.
 

englishrick

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Tentative Course Outline:

1. Introduction to plant breeding – Historical concepts, strategy and objectives. Plant genetic resources, agencies engaged in plant breeding.


2. Reproduction in crop plants – Types of reproduction, meiosis, mitosis, male and female gametogenesis, self- and cross-pollinated crops, apomixis.


3. Gene recombination in plant breeding - Mendelian heredity, progeny test, testcross, backcross, gene interactions, linkage and crossing over.


4. Quantitative inheritance in plant breeding - Types of variations, qualitative and quantitative characters and their mode of inheritance, types of gene action, heritability, genetic advance.


5. Variations in chromosome number – Euploids, aneuploids, chromosome addition and substitutions.

6. Inbreeding, parent selections and hybridization - Consequences of inbreeding, sources of germplasm, population formation by hybridization.


7. Breeding self-pollinated crops – Different breeding methods, e.g. pedigree, bulk population, single seed descent, etc.


8. Doubled-haploid (DH) breeding – Induction of haploids, genetic features of DH, breeding procedure and applications.


9. Backcross and multiline breeding – General features of backcross, recurrent and donor parent, backcross procedure, isolines. Multiline breeding and composite cultivars.


10. Population improvement: Hardy-Weinberg principle.


11. Breeding cross-pollinated crops - Recurrent selection – simple, half-sib, full-sib, reciprocal. Synthetics - procedure of development.


12. Breeding asexually propagated and apomictic crops.


13. Hybrid breeding – Heterosis and its genetic basis, hybrids, concept of combining ability.


14. Pollination control mechanisms and their manipulations in hybrid breeding – Different pollination control mechanisms including self-incompatibility, genetic and cytoplasmic male sterility; and their applications in hybrid breeding.


15. Mutation breeding - Mutagenic agents, materials for treatment, breeding procedures, applications.


16. Breeding for disease resistance - Vertical and horizontal resistance, examples of introgression of resistance genes, breeding methods.


17. Wide hybridization – Wide cross barriers, overcoming the barriers, example of interspecific gene transfer.


18. Molecular plant breeding – Types of molecular markers, application of MM in plant breeding


19. Plant genetic engineering – Application in crop improvement


20. Field-plot techniques – Sources of variation, experimental designs.

21. Pre-commercial and commercial aspects - Cultivar testing and registration procedures, pre-commercial and commercial seed productions.

22. Tour to field, laboratories and greenhouses – Practical experience on some of the plant breeding activities.
 

VerdantGreen

Genetics Facilitator
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thanks rick!

been looking at. Allard, “Principles of Plant Breeding”

its a very expensive book!

i can get the original version for about £40 or the 2nd edition 1999 for £80

questions - would it be a waste to get the first edition? is the second edition significantly revised? is this book the definitive text for people who want to breed cannabis?

basically, should i splash out 80 squid on it ???

V.
 

daddy fingaz

Active member
Jeez rick have u been on the uber potent sativa all night/morning!!

..not got time to read all that now, looks interesting though, will drop by for a read later when i have my spectacles and a bit more time!
 

Londinium

Well-known member
ICMag Donor
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Shit! Ricks discovered Ballard....Now we are in trouble...lol!!!
VG Its contains extremely useful info for ANYone who breeds with ANY plants so great for U in that sense but do bear in mind some of the small things that set Canna apart from other plant species. Both books are worth having but second is very different,much more than a revision IMO. JBo ;]
 

englishrick

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OK,,,,so are we set for having a look at the 2nd edition?,,,,,

nice to have ic init,,,saved my life:)

did we all have a look at the biogrophy?,,,,,do we all agree its accurate?

i dont want to sound bias in any way so im gona try to keep my personal vie out of this thread,,,,im sure this thread will atract the atention of some very wigs, they im sure will have lots of facinating info on the subject,,,

i do stress,,i dont want to get in any1`s way while they explain there poit of view,,,,,,,some of the peeps here will exteeemly opinionated,,,i dont want to add to it too with my radom view of the world

aslong as we are all in agreement , im going to start with the 2nd edition,,, il post it up chapter by chapter starting with Chapter 1 "Darwin",,,,,after we have all read it pleas state your point of view,,,,,,,,

are we all cool?
 

GreenintheThumb

fuck the ticket, bought the ride
Veteran
VG-
Since you missed it:

"Bob admitted that the second edition was really an entirely new
book that contained little carried over from the parent book
published 39 years earlier. The second book is really a plant
population genetics book that synthesizes a life’s study of
plant evolution. "
 

love?

Member
I think I remember reading that the 1st edition was more about artificial selection whereas the 2nd edition was rewritten to be more about natural selection? Is this true? Guess the 1st edition would be of more interest to many of us?
 

VerdantGreen

Genetics Facilitator
Boutique Breeder
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VG-
Since you missed it:

"Bob admitted that the second edition was really an entirely new
book that contained little carried over from the parent book
published 39 years earlier. The second book is really a plant
population genetics book that synthesizes a life’s study of
plant evolution. "

thanks GitT - yes i skimmed the biog :redface:

so for someone like me who is unable to use large populations, the first edition would be a good start? - i was just worried that some of the info in there might be outdated...

or should i just look out for a copy of 'closet hacking for Dummies'? ;)

V.:D
 

GreenintheThumb

fuck the ticket, bought the ride
Veteran
You haven't read Soma's book yet? ;)

I'd go with the second edition no matter the population size you can run. Hopefully Rick'll start posting it up here.
 
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